Home Acta Virologica 2020 Acta Virologica Vol.64, No.4, p.427-432, 2020

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Founded: 1957
ISSN 0001-723X
E-ISSN 1336-2305

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Acta Virologica Vol.64, No.4, p.427-432, 2020

Title: Complete genome sequence and genetic organization of a Garlic virus D infecting garlic (Allium sativum) from northern India
Author: J. Singh, T. Ngoc Truong,, D. An, M. R. Prajapati, A. Manav, N. B. Quoc, K. Ranjan A. Kumar, P. Kumar, R. Kumar, V. K. Baranwal

Abstract: The present paper describes first full genome sequence of the Garlic virus D (GarV-D) from northern India with a genome size of 8425 bp long ssRNA. The infected leaves and bulbs of garlic variety Yamuna Safed (G-282) plants suspected for GarV-D infection were collected with the aim to identify contagion virus during March, 2018. The total RNA was extracted from the pooled garlic plants using TRIzol reagent and sequenced using an Illumina HiSeq 2000 platform. BLASTn search in the NCBI database identified contagion as GarV-D (MK518067). It shared 83.63–85.83% nucleotide sequence identities with other (GarV-D) isolates from Argentina (KF550407, KF555653, KR819505) and 83.15% with isolates from China (MF795136, MF363012).

Keywords: Allium sativum; Allexivirus; Garlic virus D; India
Published online: 26-Oct-2020
Year: 2020, Volume: 64, Issue: 4 Page From: 427, Page To: 432
doi:10.4149/av_2020_405


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